Skip to content

Pull requests: malariagen/malariagen-data-python

New pull request New
87 Open 501 Closed
87 Open 501 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Assigned to nobody Loading
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

feat: Add FASTQ-based species group detection utility (#881)
#1089 opened Mar 9, 2026 by Gopisokk Loading…
1
feat: Add user warning for empty sample metadata query (fixes #1083)
#1088 opened Mar 9, 2026 by Gopisokk Loading…
1
feat: implement relatedness inference using sgkit pc_relate (Issue #1…
#1087 opened Mar 9, 2026 by Gopisokk Loading…
1
4
Adding limited support for Adar
#1086 opened Mar 9, 2026 by jonbrenas Loading…
fix: warn when sample_metadata() returns empty result due to case-sensitivity
#1084 opened Mar 9, 2026 by sallykinyua Loading…
1
fix: use is not None for region boundary checks in _subset_genome_sequence_region
#1082 opened Mar 9, 2026 by Carbon14-48 Loading…
docs: fix distance_sort parameter description in tree_params.py
#1081 opened Mar 9, 2026 by Carbon14-48 Loading…
Fixed lookup sample errors
#1079 opened Mar 8, 2026 by arnvptl Loading…
feat: add public sample_count_het() and cohort_heterozygosity() methods (#775)
#1077 opened Mar 8, 2026 by Tanisha127 Loading…
1
feat: allow snp_allele_frequencies to accept genomic regions
#1076 opened Mar 7, 2026 by joshitha1808 Loading…
1
Added missing docstrings for genome_features functions
#1074 opened Mar 7, 2026 by jemmziray-tech Loading…
1
1
Add VCF export support for SNP call datasets
#1071 opened Mar 7, 2026 by adilraza99 Loading…
1
2
Add caching to general_metadata to avoid repeated metadata parsing
#1069 opened Mar 7, 2026 by vshnvii Loading…
Enhance docstring for frequency plot function added doc string #826
#1068 opened Mar 7, 2026 by sallykinyua Loading…
1
3
Add LD-pruned biallelic SNP access method
#1067 opened Mar 7, 2026 by adilraza99 Loading…
1
3
Handle empty SNP/AA results in allele frequency tests
#1066 opened Mar 6, 2026 by adilraza99 Loading…
1
Optimize quarter column computation using vectorized NumPy operations
#1065 opened Mar 6, 2026 by vshnvii Loading…
1
Added LD pruning support and PLINK export for ADMIXTURE analysis
#1063 opened Mar 6, 2026 by rehanxt5 Loading…
1
13
Add VcfConverter module to export biallelic SNPs to Variant Call Format
#1061 opened Mar 6, 2026 by shauryam2807 Loading…
1
10
feat: add VCF export functionality resolves #1054
#1060 opened Mar 6, 2026 by Tanisha127 Loading…
1 task
4
feat: add LD pruning and admixture data preparation
#1059 opened Mar 6, 2026 by 31puneet Loading…
1
2
Add example notebook demonstrating genomic data exploration using mal…
#1058 opened Mar 6, 2026 by priyarai121 Loading…
2
fix: decode URL-escaped local filesystem paths in _init_filesystem
#1057 opened Mar 6, 2026 by Sharon-codes Loading…
1
2
Add cohort_geometries() to access cohort GeoJSON metadata
#1053 opened Mar 5, 2026 by adilraza99 Loading…
2
Improve robustness of cohorts() metadata access
#1052 opened Mar 5, 2026 by adilraza99 Loading…
2
ProTip! What’s not been updated in a month: updated:<2026-02-09.